skip to content »

Lichtarge Computational Biology Lab

Houston, Texas

Lichtarge Computational Biology Lab
Lichtarge Computational Biology Lab
not shown on screen

Downloads and Tutorial for ET programs, tools and services

Supplementary materials (can be accessed from other pages on this website)


Name

Type

Purpose

Input

Output

UET: A database of evolutionarily-predicted functional determinants of protein sequences that cluster as functional sites in protein structures

 

Database and Web server

Functional site prediction

PDB ID

PDB coordinates file

UniProt accession number

sequence in FASTA format

ET analyses files

JSmol structure view

sequence view

phylogenetic tree view

PyMOL ETV

 

Molecular viewer

Functional site prediction,

visualization

ET rank data,

PDB,

PyMOL scripts

Interactive ET prismatic color assignment

Clustering z-score calculations

Interfaces and Biological Assemblies

Evolutionary Trace Results

 

Web server

Functional site prediction

PDB ID

ET analyses files

Evolutionary Trace Report Maker

Web server

Functional site prediction

PDB ID or UniProt accession number

PDF report,

ET analyses files

Evolutionary Trace Viewer (ETV)

Molecular viewer,

Web application,

Web server

Functional site prediction,

visualization

ET analyses (.etvx file),

PDB ID

3D molecular graphics, ET analyses files, Multiple sequence alignment, Evolutionary tree

Evolutionary Trace Annotation (ETA) Server

Web server

Functional annotation

PDB ID

EC and GO annotations,

3D templates,

PDB matches

Contact Metric Server

Web Server

Functional Annotation

PDB ID

GO annotations

PDB matches

Evolutionary Action (EA) Server (Beta)

Web server

Experimental impact of missense mutation

UniProt accession number

Evolutionary Action scores for point mutations in human proteins