Evolutionary Trace Viewer 2.0
Features
-Utilizes Java Web Start
-View Evolutionary Trace results
-Modify existing traces
-Run new traces
Minimum Requirements
-32 MB 3D video card
-Internet connection to run traces and download updates
-Java JRE 1.5 or newer
-Only extensively tested under Windows XP
The Evolutionary Trace viewer is freely available for non-profit use. The current beta release is still under development and has been tested thoroughly only on Windows XP. Mac users need to make sure that "ETViewer_2_pub.jnlp" opens in Java Web Start (part of Java 1.4.2) rather than Java Cache Viewer (part of J2SE 5.0).
Please send us your feedback.
For profit use of the Evolutionary Trace Server may be arranged by contacting Mrs. Lisa Beveridge (beveridg@bcm.tmc.edu, 713-798-6821 ) to request a license from Baylor College of Medicine.
If you intend to use the Evolutionary Trace Server and viewer as part of a published work, please cite the following papers:
- Morgan, D.H., D.M. Kristensen, D. Mittleman, and O. Lichtarge. ET Viewer: An Application for Predicting and Visualizing Functional Sites in Protein Structures. Bioinformatics. 2006 Aug 15;22(16):2049-50. Epub 2006 Jun 29.
- Mihalek, I., I. Res, O. Lichtarge. (2004). "A Family of Evolution-Entropy Hybrid Methods for Ranking of Protein Residues by Importance" J. Mol. Bio. 336(5): 1265-82.
- Lichtarge, O., H.R. Bourne and F.E. Cohen (1996). "An evolutionary trace method defines binding surfaces common to protein families." J. Mol. Biol. 257(2): 342-58.
Launch Evolutionary Trace Viewer
PDF User Manual (updated April 5, 2007)